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Submitting Snakemake jobs to Slurm
I was often confused by the many Slurm settings supported by Snakemake. Partly because Snakemake provides huge flexibility to control the behaviour of Slurm, partly because I failed to find consistent documentations over the issues that I met. Therefore, I write my learnings down here.
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Chord sequence 1-6-2-5-1
I posted about a series of fantastic courses by Karen Cuneo Ramirez about music theory. Inspired by her, I summarize the technique introduced by her in the course “chord sequence 1-6-2-5-1” in a figure.
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Discoveries Weekly No. 9 (June 8-14, 2020)
Here are some discoveries that fascinate me this week.
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Learning Logstash - Part I
Logstash a component of the ELK stack. ELK is the acronym of Elasticsearch, Logstash, and Kibana. I learned how to use it with examples.
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Meta-analysis of single-cell RNA-sequencing studies for SARS-CoV-2
A preprint by Muus et al. reports a large collaborative meta-analysis of more than hundred single-cell and single-nucleus RNA-seq studies to characterize key proteins involved in host-pathogen interactions of the SARS-CoV-2 virus that causes the COVID-19 pandemic. Here are my learning notes.