Categories medchem edX Medicinal Chemistry - Chapter Six on Blood and Drug Transport edX Medicinal Chemistry - Chapter Five on Receptors edX Medicinal Chemistry - Chapter Four on enzymes edX Medicinal Chemistry - Chapter Three on protein structures edX Medicinal Chemistry - Chapter Two on the drug discovery process edX Medicinal Chemistry - chapter one machine-learning Deep learning with graph networks Machine Learning with CatBoost Keras, a python deep learning library Course on Natural Language Processing with Deep Learning - Stanford CS224n A crash course to start state-of-the-art NLP in 2018 Ridge regression, LASSO, and elastic net explained bioinformatics Analysing single-cell T-cell receptor sequencing data with Scirpy Nucleosome positioning and its prediction Covariates and control variables explained Filter BAM/SAM files by insert size Pharmacogenomics of GPCR Drug Targets programming Read and look up words from Linux command line Solution to the Git problem of loose object is corrupt Continuous documentation, testing, and integration for R packages Submitting Snakemake jobs to Slurm Learning Logstash - Part I Axis in Python and MARGIN in R explained Linking native routines between R packages - a demo Building R and/or R packages for Windows Disable non-portable compiler flags with ~/.R/Makevars Install R in Linux MINT 18 Develop R packages with Rcpp and RStudio Notes on using sqlite3 career RISE studentship to analyse vascular network images Staying mentally healthy during the coronavirus pandemic Talk at *Insight China* Zürich Life Science Day 2018: presentation and impressions DrugDiscovery Public talk about target and modality selection in drug discovery Introducing computational biology and multiscale modeling to pharmacists A SPARK for therapeutic pathway hunting Multispecific drugs reviewed An application of machine learning for DNA-encoded library screening Spotting problems that both matter and are computationally solvable RNA-guided endonuclease editing: history and testing in the clinic Probing protein communities with mass spectrometry Welcome, Aviv Regev! Bioinformatics approaches to understanding the MoA of a compound Molecular Phenotyping in Drug Discovery DiscoveryWeekly Discoveries Weekly No. 16 (July 28-August 2, 2020): Zettelkasten Discoveries Weekly No. 15 (July 20-July 26, 2020) Discoveries Weekly No. 14 (July 13-July 19, 2020) Discoveries Weekly No. 13 (July 6-July 12, 2020) Discoveries Weekly No. 12 (June 29-July 5, 2020) Discoveries Weekly No. 11 (June 22-28, 2020) Discoveries Weekly No. 10 (June 15-21, 2020) Discoveries Weekly No. 9 (June 8-14, 2020) Discoveries Weekly No. 8 (June 1-7, 2020) Discoveries Weekly No. 7 (May 25-31, 2020) Discoveries Weekly No. 6 (May 18-24, 2020) Discoveries Weekly No. 5 (May 11-17, 2020) Discoveries Weekly No. 4 (May 4-8, 2020) Discoveries Weekly No. 3 (April 25-May 1, 2020) Discoveries Weekly No. 2 (April 20-27, 2020) Discoveries Weekly No. 1 (April 13-20, 2020) Notes About time Configuring the home wireless network Mathematics Learning from mathematical models of infectious-disease dynamics Book Nonviolent communication Biology Meta-analysis of single-cell RNA-sequencing studies for SARS-CoV-2 A fresh look at tumour and immune-system dynamics in lung cancer LOX mediates doxorubicin resistance in triple-negative breast cancer models Music Chord sequence 1-6-2-5-1 Statistics Three classical approaches to hypothesis testing Degree of freedom in statistical testing Genomics Intrisincally disodered regions in transcription factors MultiScaleModelling Mathematical modelling and single-cell RNA sequencing for cancer immunotherapy notes Thoughts inspired by a recital of Igor Levit AMIDD Applied Mathematics and Informatics In Drug Discovery (2020) Career Postdoc position on intestinal human model systems and applications in modelling Postdoc position on spatial transcriptomics and machine learning Six-month internship in pharmacometrics for master/PhD students Roche Predictive Modeling and Data Analytics Summer School 2022 Internship project on graph neural network and causal inference Internship on immuno-safety Internship on graph learning with patient-level data Calling for Healthcare Xplorers Two internship positions in my team Neurobiology Ph.D. Program in Shenzhen Bioinformatics Events Roche PMDA Summer School 2024 Roche PMDA Summer School 2023 Genetoberfest, October 16-19 2023, Munich/Garching children Roche Zukunftstag 2023 biology Micro RNA, Big Prize